[,MotifEnrichmentReport-method

$,MotifEnrichmentReport-method

names,MotifEnrichmentReport

names,MotifEnrichmentReport-method

name

drop

Columns stored in the motif enrichment report Access a column by name Subset the report

A toolkit of high-level functions for DNA motif scanning
and enrichment analysis built upon Biostrings. The main
functionality is PWM enrichment analysis of already known PWMs
(e.g. from databases such as MotifDb), but the package also
implements high-level functions for PWM scanning and
visualisation. The package does not perform "de novo" motif
discovery, but is instead focused on using motifs that are
either experimentally derived or computationally constructed by
other tools.

Robert Stojnic

PWMEnrich

PWM enrichment analysis

names,MotifEnrichmentReport function

Columns stored in the motif enrichment report

  Access a column by name

  Subset the report

names,MotifEnrichmentReport: Names of variables

Description

Arguments

Value