length

length,PWM-method

names,PWM

names,PWM-method

$,PWM-method

name

Name of different pieces of information associated with
 PWM Access a property by name Returns the motif length, i.e. the number of columns in
 the PWM.

A toolkit of high-level functions for DNA motif scanning
and enrichment analysis built upon Biostrings. The main
functionality is PWM enrichment analysis of already known PWMs
(e.g. from databases such as MotifDb), but the package also
implements high-level functions for PWM scanning and
visualisation. The package does not perform "de novo" motif
discovery, but is instead focused on using motifs that are
either experimentally derived or computationally constructed by
other tools.

Robert Stojnic

PWMEnrich

PWM enrichment analysis

names,PWM function

Name of different pieces of information associated with
  PWM

  Access a property by name

  Returns the motif length, i.e. the number of columns in
  the PWM.

names,PWM: Names of variables

Description

Arguments

Value