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PandemicLP (version 1.3.0)

Long Term Prediction for Epidemic and Pandemic Data

Description

Implementation of the methodology described in which can be also found in help(models). Implemented models are currently the Poisson distribution. The mean function can be the basic generalized logistic form, or the seasonal effect which has under- or over-reporting effects in up to three weekdays, or the two curves form. Bayesian inference is made available through the 'stan' software and its diagnostic functions pool can be used. Plot methods are implemented to mimic the graphics from the 'shiny' app in the URL using the 'plotly' library.

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Version

Install

install.packages('PandemicLP')

Monthly Downloads

34

Version

1.3.0

License

GPL-3

Maintainer

Guido Alberti Moreira

Last Published

March 16th, 2022

Functions in PandemicLP (1.3.0)

PandemicLP

PandemicLP: Modeling Pandemic Data
pandemicEstimated-objects

pandemicEstimated objects: Fitted PandemicLP model
covid19BH

Covid-19 data for Belo Horizonte/MG - Brazil
models

Models used in the PandemicLP package
format_data

Format epidemiological data
pandemicData-objects

pandemicData objects: Pandemic Data
pandemicPredicted-objects

pandemicPredicted objects: Predictions made from a fitted PandemicLP model
density.pandemicEstimated

Draw estimated density of the parameters for the pandemic model
country_list

List of countries available in the Covid-19 database
load_covid

Load Covid-19 Data
pandemic_stats

Relevant Statistics of the Pandemic Model
plottedPandemicData-objects

plottedPandemicData objects: Plots for pandemic data using the plotly library
traceplot,pandemicEstimated-method

Draw traceplot of the parameters for the pandemic model
pandemicStats-objects

pandemicStats objects: 95% Credible Interval predictions from PandemicLP model
print.summary.pandemicEstimated

Summary method for pandemicEstimated objects
pandemic_model

Bayesian growth curve models for epidemiological data via Stan
plot.pandemicPredicted

Plot pandemic predictions
plottedPandemic-objects

plottedPandemic objects: Plots for pandemic data using the plotly library
print.plottedPandemicData

Print method for plottedPandemicData objects
state_list

List of states available in the Covid-19 database
plot.pandemicData

Plot pandemic data
print.pandemicPredicted

Prints prediction summary of pandemic model
print.pandemicEstimated

Print method for pandemicEstimated objects
posterior_predict.pandemicEstimated

Draw from the posterior predictive distribution for pandemic data
print.plottedPandemic

Print method for plottedPandemic objects
print.pandemicStats

Print method for pandemicStats objects