Pasha-package

Pasha

Pasha package (Preprocessing of Aligned Sequences from HTS Analyses) gives
access to several functions relative to high-thoughtput sequencing and specially 
optimized for chromatin-oriented sequencing experiments. It also gives access 
to a full pipeline using these functions to process (automatically) dataset 
from various experimental setups.

package

Pipeline and additional tools designed to handle aligned data from chromatin NGS experiments (less adapted for typical RNAseq applications). Specifically, starting from aligned reads after sequencing, the pipeline function aims at removing artefacts from datasets, estimate in-silico the fragments size, and generate WIG files with corrected values. The package also provides several tools for WIG files manipulations, scaling, merging and subtract (e.g. input).

Pasha-package: Pasha package (Preprocessing of Aligned Sequences from HTS Analyses)

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