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Path2PPI (version 1.2.2)

Prediction of pathway-related protein-protein interaction networks

Description

Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

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Version

Version

1.2.2

License

GPL (>= 2)

Maintainer

Oliver Philipp

Last Published

February 15th, 2017

Functions in Path2PPI (1.2.2)

predictPPI

Prediction of the PPI
showInteraction

Information about an interaction
getPPI

Get predicted PPI
homologyScore

Computes homology scores
removeReference

Remove reference species
Path2PPI-class

Class "Path2PPI"
plot.Path2PPI

Plots the predicted PPI
showReferences

Information about reference species
ai

Data set to predict autophagy induction in Podospora anserina
addReference

Add reference species
getHybridNetwork

Get hybrid network of the predicted PPI