An R package for pathway analysis using topological information
Description
PathNet uses topological information present in pathways
and differential expression levels of genes (obtained from
microarray experiment) to identify pathways that are 1)
significantly enriched and 2) associated with each other in the
context of differential expression. The algorithm is described
in: PathNet: A tool for pathway analysis using topological
information. Dutta B, Wallqvist A, and Reifman J. Source Code
for Biology and Medicine 2012 Sep 24;7(1):10.