summitMapping,PathwaySpace-method

summitMapping

The <code>summitMapping</code> method implements a segmentation
strategy to identify summits on a 2D-landscape image 
(see <code>summitWatershed</code>).

For a given graph containing vertices, edges, and a signal associated with the vertices, the 'PathwaySpace' package performs a convolution operation, which involves a weighted combination of neighboring vertices and their associated signals. The package then uses a decay function to project these signals, creating geodesic paths on a 2D-image space. 'PathwaySpace' could have various applications, such as visualizing and analyzing network data in a graphical format that highlights the relationships and signal strengths between vertices. It can be particularly useful for understanding the influence of signals through complex networks. By combining graph theory, signal processing, and visualization, the 'PathwaySpace' package provides a novel way of representing and analyzing graph data.

Mauro Castro

PathwaySpace

Spatial Projection of Network Signals along Geodesic Paths

Victor Apolonio

Vinicius Chagas

summitMapping,PathwaySpace-method function

<dl><dt>ps</dt>
<dd>A PathwaySpace class object.</dd>
<dt>maxset</dt>
<dd>A single positive integer indicating the maximum number 
of summits to be returned by the segmentation function.</dd>
<dt>minsize</dt>
<dd>A single positive integer indicating the minimum size 
of the summits.</dd>
<dt>threshold</dt>
<dd>A threshold provided as a fraction (in <code>[0,1]</code>) of the
max signal intensity.</dd>
<dt>verbose</dt>
<dd>A single logical value specifying to display detailed 
messages (when <code>verbose=TRUE</code>) or not (when <code>verbose=FALSE</code>).</dd>
<dt>segm_fun</dt>
<dd>A segmentation function used to detect summits
(see <code>summitWatershed</code>).</dd>
<dt>...</dt>
<dd>Additional arguments passed to the segmentation function.</dd></dl>

Arguments

Author

Mapping Summits on PathwaySpace Images — summitMapping,PathwaySpace-method

<dl>

<dt>ps</dt>
<dd>A PathwaySpace class object.</dd>


<dt>maxset</dt>
<dd>A single positive integer indicating the maximum number 
of summits to be returned by the segmentation function.</dd>


<dt>minsize</dt>
<dd>A single positive integer indicating the minimum size 
of the summits.</dd>


<dt>threshold</dt>
<dd>A threshold provided as a fraction (in <code>[0,1]</code>) of the
max signal intensity.</dd>


<dt>verbose</dt>
<dd>A single logical value specifying to display detailed 
messages (when <code>verbose=TRUE</code>) or not (when <code>verbose=FALSE</code>).</dd>


<dt>segm_fun</dt>
<dd>A segmentation function used to detect summits
(see <code>summitWatershed</code>).</dd>


<dt>...</dt>
<dd>Additional arguments passed to the segmentation function.</dd>

</dl>

summitMapping,PathwaySpace-method: Mapping Summits on PathwaySpace Images

Description

Usage

Value

Arguments

Author

See Also

Examples