PathwaySpace-class

PathwaySpace: An S4 class for signal propagation on image spaces

For a given graph containing vertices, edges, and a signal associated with the vertices, the 'PathwaySpace' package performs a convolution operation, which involves a weighted combination of neighboring vertices and their associated signals. The package then uses a decay function to project these signals, creating geodesic paths on a 2D-image space. 'PathwaySpace' could have various applications, such as visualizing network data in a graphical format that highlights the relationships and signal strengths between vertices. It can be particularly useful for understanding the influence of signals through complex networks. By combining graph theory, signal processing, and visualization, the 'PathwaySpace' package provides a novel way of representing graph data.

Mauro Castro

PathwaySpace

Spatial Projection of Network Signals along Geodesic Paths

Victor Apolonio

Vinicius Chagas

Sysbiolab and Collaborators 

PathwaySpace-class function

<dl>
<dt><code>nodes</code></dt>
<dd>A data frame with xy-vertex coordinates.</dd></dl>
<dt><code>edges</code></dt>
<dd>A data frame with edges.</dd>
<dt><code>graph</code></dt>
<dd>An igraph object.</dd>
<dt><code>image</code></dt>
<dd>A raster background image matrix.</dd>
<dt><code>pars</code></dt>
<dd>A list with parameters.</dd>
<dt><code>misc</code></dt>
<dd>A list with intermediate objects for downstream methods.</dd>
<dt><code>projections</code></dt>
<dd>A list with processed objects for downstream methods.</dd>
<dt><code>status</code></dt>
<dd>A vector containing the processing status of the
PathwaySpace object.</dd>

Slots

see <code>buildPathwaySpace</code> constructor.

Constructor

Sysbiolab Team, Mauro Castro (<a href="/link/mauro.castro%40ufpr.br?package=PathwaySpace&version=1.1.0" data-mini-rdoc="PathwaySpace::mauro.castro@ufpr.br">mauro.castro@ufpr.br</a>)

Author

PathwaySpace: An S4 class for signal propagation on image spaces — PathwaySpace-class

<dl>
<dt><code>nodes</code></dt>
<dd>A data frame with xy-vertex coordinates.</dd>


<dt><code>edges</code></dt>
<dd>A data frame with edges.</dd>


<dt><code>graph</code></dt>
<dd>An igraph object.</dd>


<dt><code>image</code></dt>
<dd>A raster background image matrix.</dd>


<dt><code>pars</code></dt>
<dd>A list with parameters.</dd>


<dt><code>misc</code></dt>
<dd>A list with intermediate objects for downstream methods.</dd>


<dt><code>projections</code></dt>
<dd>A list with processed objects for downstream methods.</dd>


<dt><code>status</code></dt>
<dd>A vector containing the processing status of the
PathwaySpace object.</dd>


</dl>

see <code>buildPathwaySpace</code> constructor.

Sysbiolab Team, Mauro Castro (<a href='mailto:mauro.castro@ufpr.br'>mauro.castro@ufpr.br</a>)

PathwaySpace-class: PathwaySpace: An S4 class for signal propagation on image spaces

Description

Arguments

Value

Slots

Constructor

Author