PatientProfiles (version 1.3.1)

addTableIntersectFlag: Compute a flag intersect with an omop table.

Description

Compute a flag intersect with an omop table.

Usage

addTableIntersectFlag(
  x,
  tableName,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  window = list(c(0, Inf)),
  targetStartDate = startDateColumn(tableName),
  targetEndDate = endDateColumn(tableName),
  inObservation = TRUE,
  nameStyle = "{table_name}_{window_name}",
  name = NULL
)

Value

table with added columns with intersect information.

Arguments

x

Table with individuals in the cdm.

tableName

Name of the table to intersect with. Options: visit_occurrence, condition_occurrence, drug_exposure, procedure_occurrence, device_exposure, measurement, observation, drug_era, condition_era, specimen, episode.

indexDate

Variable in x that contains the date to compute the intersection.

censorDate

whether to censor overlap events at a specific date or a column date of x.

window

window to consider events in.

targetStartDate

Column name with start date for comparison.

targetEndDate

Column name with end date for comparison.

inObservation

If TRUE only records inside an observation period will be considered.

nameStyle

naming of the added column or columns, should include required parameters.

name

Name of the new table, if NULL a temporary table is returned.

Examples

# \donttest{
cdm <- mockPatientProfiles()

cdm$cohort1 |>
  addTableIntersectFlag(tableName = "visit_occurrence")

mockDisconnect(cdm = cdm)
# }