PeakErrorChrom

Compute the <code>PeakError</code> assuming that <code>peaks</code> and <code>regions</code> are on the
same chrom.

Chromatin immunoprecipitation DNA sequencing results in genomic
tracks that show enriched regions or peaks where proteins are bound.
This package implements fast C code that computes the true and false
positives with respect to a database of annotated region labels.

Toby Hocking

PeakError

Compute the Label Error of Peak Calls

PeakErrorChrom function

<dl> <dt>peaks</dt>
<dd>data.frame with columns chromStart, chromEnd. NOTE: chromStart
should be 0-based and chromEnd should be 1-based. EXAMPLE: the
first 100 base of of a chromosome are chromStart=0,
chromEnd=100. The second 100 bases are chromStart=100,
chromEnd=200.</dd> <dt>regions</dt>
<dd>data.frame with columns chromStart, chromEnd.</dd></dl>

Arguments

Author

PeakErrorChrom — PeakErrorChrom

<dl>

 <dt>peaks</dt>
<dd>data.frame with columns chromStart, chromEnd. NOTE: chromStart
should be 0-based and chromEnd should be 1-based. EXAMPLE: the
first 100 base of of a chromosome are chromStart=0,
chromEnd=100. The second 100 bases are chromStart=100,
chromEnd=200.</dd>

 <dt>regions</dt>
<dd>data.frame with columns chromStart, chromEnd.</dd>

</dl>

PeakErrorChrom: PeakErrorChrom

Description

Usage

Value

Arguments

Author