H3K27ac.TDH.MMM4

This is used in the package tests.

datasets

Jointly segment several ChIP-seq samples to find the peaks
which are the same and different across samples. The fast approximate
maximum Poisson likelihood algorithm is described in
"PeakSegJoint: fast supervised peak detection via joint segmentation
of multiple count data samples"
<arXiv:1506.01286> by TD Hocking and G Bourque.

Toby Hocking

PeakSegJoint

Joint Peak Detection in Several ChIP-Seq Samples

H3K27ac.TDH.MMM4 function

A data frame with 29905 observations on the following 5 variables.<dl class="dl-horizontal">
 <dt><code>sample.id</code></dt><dd>a factor</dd>
 <dt><code>chrom</code></dt><dd>a character vector</dd>
 <dt><code>chromStart</code></dt><dd>a numeric vector</dd>
 <dt><code>chromEnd</code></dt><dd>a numeric vector</dd>
 <dt><code>count</code></dt><dd>a numeric vector</dd>
 </dl>

Format

Some histone ChIP-seq data — H3K27ac.TDH.MMM4

A data frame with 29905 observations on the following 5 variables.<dl class='dl-horizontal'>
 <dt><code>sample.id</code></dt><dd>a factor</dd>
 <dt><code>chrom</code></dt><dd>a character vector</dd>
 <dt><code>chromStart</code></dt><dd>a numeric vector</dd>
 <dt><code>chromEnd</code></dt><dd>a numeric vector</dd>
 <dt><code>count</code></dt><dd>a numeric vector</dd>
 </dl>

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H3K27ac.TDH.MMM4: Some histone ChIP-seq data

Description

Usage

Arguments

Format