demo.profiles

These profiles resulted in negative means in a buggy version of the
 PeakSegJointFaster code.

datasets

Jointly segment several ChIP-seq samples to find the peaks
which are the same and different across samples. The fast approximate
maximum Poisson likelihood algorithm is described in
"PeakSegJoint: fast supervised peak detection via joint segmentation
of multiple count data samples"
<arXiv:1506.01286> by TD Hocking and G Bourque.

Toby Hocking

PeakSegJoint

Joint Peak Detection in Several ChIP-Seq Samples

demo.profiles function

A data frame with 51204 observations on the following 5 variables.<dl class="dl-horizontal">
 <dt><code>sample.id</code></dt><dd>a character vector</dd>
 <dt><code>sample.group</code></dt><dd>a character vector</dd>
 <dt><code>chromStart</code></dt><dd>a numeric vector</dd>
 <dt><code>chromEnd</code></dt><dd>a numeric vector</dd>
 <dt><code>count</code></dt><dd>a numeric vector</dd>
 </dl>

Format

Demo profiles — demo.profiles

A data frame with 51204 observations on the following 5 variables.<dl class='dl-horizontal'>
 <dt><code>sample.id</code></dt><dd>a character vector</dd>
 <dt><code>sample.group</code></dt><dd>a character vector</dd>
 <dt><code>chromStart</code></dt><dd>a numeric vector</dd>
 <dt><code>chromEnd</code></dt><dd>a numeric vector</dd>
 <dt><code>count</code></dt><dd>a numeric vector</dd>
 </dl>

demo.profiles: Demo profiles

Description

Usage

Arguments

Format