Learn R Programming

⚠️There's a newer version (2024.10.1) of this package.Take me there.

PeakSegOptimal (version 2024.1.24)

Optimal Segmentation Subject to Up-Down Constraints

Description

Computes optimal changepoint models using the Poisson likelihood for non-negative count data, subject to the PeakSeg constraint: the first change must be up, second change down, third change up, etc. For more info about the models and algorithms, read "A log-linear time algorithm for constrained changepoint detection" by TD Hocking et al.

Copy Link

Version

Install

install.packages('PeakSegOptimal')

Monthly Downloads

251

Version

2024.1.24

License

GPL-3

Issues

Pull Requests

Stars

Forks

Maintainer

Toby Hocking

Last Published

January 24th, 2024

Functions in PeakSegOptimal (2024.1.24)

H3K4me3_PGP_immune_chunk24

H3K4me3_PGP_immune ChIP-seq data set chunk 24
H3K4me3_XJ_immune_chunk1

H3K4me3_XJ_immune chunk 1
PeakSegPDPAchrom

PeakSegPDPAchrom
PoissonLoss

PoissonLoss
oracleModelComplexity

oracleModelComplexity
PeakSegPDPA

PeakSegPDPA
PeakSegFPOP

PeakSegFPOP
PeakSegFPOPchrom

PeakSegFPOPchrom
PeakSegPDPAInf

PeakSegPDPAInf