PepMapViz (version 1.1.0)

strip_sequence_Spectronaut: Strip sequence from Spectronaut outputs

Description

This function takes Spectronaut output containing a column with peptide sequences to be stripped and converts it into a new dataframe with the stripped sequence

Usage

strip_sequence_Spectronaut(data, column, convert_column)

Value

A dataframe with a column containing stripped sequence

Arguments

data

A dataframe with a column containing peptide sequences to be stripped

column

The name of the column containing the peptide sequences to be stripped.

convert_column

The name of the column where the stripped sequences will be stored.

Examples

library(data.table)
data <- data.table(
  EG.IntPIMID = c(
    "_[+42]M[-16]DDREDLVYQAK_",
    "_EAAENSLVAYK_",
    "_IEAELQDIC[+57]NDVLELLDK_"
  ),
  Condition = c("A", "B", "B")
)
converted_data <- strip_sequence_Spectronaut(data, 'EG.IntPIMID', 'Sequence')