ExampleDataSets: Summary of example data sets.

Description

Explaining example data of PepPrep package.

Arguments

Details

‘ExampleData.RData’ contains a data.frame called testtbl (annotated single nucleotide variant (SNV)). Columns in testtbl: Chr: Chromosom number Start: Startposition End: Endposition Ref: Nucleotide in referencegenome Obs: Observed Nucleotide AAChange: Information from ANNOVAR it should look like NM_ID:c.Ref_Pos_Obs:p.RefAminoacid_Pos_MutAminoacid Gene: Gene name

‘ExampleHomo_sapiens.GRCh37.70.pep.all.fa’ Contains the Ensembl protein ENSP00000361883 in FASTA format

‘ExampleHumanProt.fasta’ Two human protein sequneces from UniProt. ‘ExampleMouseProt.fasta’ Two mouse protein sequences from UniProt.

Examples

Run this code

testtbl <- system.file("extdata", "ExampleData.RData", package="PepPrep")
load(testtbl)
testtbl
attributes(testtbl)
lapply(testtbl,class)

Run the code above in your browser using DataLab