membpos: To theoretically calculate the position of a protein sequence
Description
This function calculates the theoretical position of a protein sequence based on the relationship between the hydrophobic moment and hydrophobicity scale proposed by Eisenberg in 1984
Usage
membpos(seq,structure)
Arguments
seq
AA sequence string in upper case
structure
Three dimentional structure of protein. If it is alpha-helix type "a" or if it is beta-sheet type "b"
References
Eisenberg, David. "Three-dimensional structure of membrane and surface proteins." Annual review of biochemistry 53.1 (1984): 595-623.