Peptides (version 0.4)

plot.xvg: Plot time series from GROMACS XVG files

Description

Read and plot output data from a XVG format file.

Usage

## S3 method for class 'xvg':
plot(x, ...)

Arguments

x

a .XVG output file from GROMACS.

...

ignored

Details

XVG is the default format file from GROMACS molecular dynamics package, contains data formatted for import into the Grace 2-D plotting program.

References

Pronk, S., Pall, S., Schulz, R., Larsson, P., Bjelkmar, P., Apostolov, R., ... & Lindahl, E. (2013). GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit. Bioinformatics, 29 (7), 845-854.

Examples

## Plot one file
plot.xvg(system.file("xvg-files/epot.xvg",package="Peptides"))

## Plotting multiple files
par(mfcol=c(1,3))
plot.xvg(system.file("xvg-files/POPG.xvg",package="Peptides"))
plot.xvg(system.file("xvg-files/POPE.xvg",package="Peptides"))
plot.xvg(system.file("xvg-files/POPC.xvg",package="Peptides"))