PharmacoGx (version 1.1.6)

checkPSetStructure: A function to verify the structure of a PharmacoSet

Description

This function checks the structure of a PharamcoSet, ensuring that the correct annotations are in place and all the required slots are filled so that matching of cells and drugs can be properly done across different types of data and with other studies.

Usage

checkPSetStructure(pSet, plotDist = FALSE, result.dir = ".")

Arguments

pSet

A PharmacoSet to be verified

plotDist

Should the function also plot the distribution of molecular data?

result.dir

The path to the directory for saving the plots as a string

Examples

data(CCLEsmall)

checkPSetStructure(CCLEsmall)