PhenotypeR (version 0.1.6)

cohortDiagnostics: Run cohort-level diagnostics

Description

Runs phenotypeR diagnostics on the cohort. The diganostics include: * Age groups and sex summarised. * A summary of visits of everyone in the cohort using visit_occurrence table. * A summary of age and sex density of the cohort. * Attritions of the cohorts. * Overlap between cohorts (if more than one cohort is being used).

Usage

cohortDiagnostics(cohort, survival = FALSE, match = TRUE, matchedSample = 1000)

Value

A summarised result

Arguments

cohort

Cohort table in a cdm reference

survival

Boolean variable. Whether to conduct survival analysis (TRUE) or not (FALSE).

match

Boolean variable. Whether to conduct the analysis for the matched cohorts (TRUE) or not (FALSE).

matchedSample

Only if match = TRUE. The number of people to take a random sample for matching. If NULL, no sampling will be performed.

Examples

# \donttest{
library(PhenotypeR)

cdm <- mockPhenotypeR()

result <- cohortDiagnostics(cdm$my_cohort,
                            match = TRUE)

CDMConnector::cdmDisconnect(cdm = cdm)
# }