PhyInsight (version 0.1.0)

ManipStringSet: Manipulate String Set

Description

Orient and align DNA sequences in a DNA string set object.

Usage

ManipStringSet(DNAStringSet)

Value

A DNA string set (that is ready for analysis)

Arguments

DNAStringSet

A DNA string set object.

Examples

# generate and manipulate a DNA string set object using the taxon 'Antheraea polyphemus'
specdf_Anth <- querySpecData("Antheraea polyphemus")[1:10,]

DNABin_Anth <- genDNABin(specdf_Anth)

DNAStringset_Anth <- genDNAStringSet(DNABin_Anth)

DNAStringSet_Anth_manipulated <- ManipStringSet(DNAStringset_Anth)