compute_betas_from_shifts

a phylogenetic tree, class <code><a rd-options="ape" href="/link/phylo?package=PhylogeneticEM&version=1.0.0&to=ape" data-mini-rdoc="ape::phylo">phylo</a></code>.

phylo

the optimal value at the root of the tree.

optimal.value

shifts


<code>compute_betas_from_shifts</code> computes the optimal values at the nodes and tips of the
tree, given the value at the root and the list of shifts occuring in the tree.
It assumes an OU model.



Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

compute_betas_from_shifts function

a phylogenetic tree, class <code><a rd-options='ape' href='phylo'>phylo</a></code>.

compute_betas_from_shifts: Computation of the optimal values at nodes and tips.

Description

Usage

Arguments

Value