compute_expectations.scOU

(list): state of the root, with:
random : random state (TRUE) or deterministic state (FALSE)
value.root : if deterministic, value of the character at the root
exp.root : if random, expectation of the character at the root
var.root : if random, variance of the character at the root (pxp matrix)

root.state

(list) position and values of the shifts :
edges : vector of the K id of edges where the shifts are
values : matrix p x K of values of the shifts on the edges (one column = one shift)
relativeTimes : vector of dimension K of relative time of the shift from the
parentnode of edges

shifts

phylo:


<code>compute_expectations.scOU</code> use the matrix formulation to compute the 
expected values at all the nodes. Assumes a stationary root.


internal


Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available.

compute_expectations.scOU: Compute the expected states of a scOU

Description

Usage

Arguments

Value