compute_residuals.simple: Residuals
Description
compute_residuals.simple computes the residuals after the fit of the
data in the simple case where the inverse of the variance matrix is given.
Usage
compute_residuals.simple(phylo, Y_data_vec, sim, Sigma_YY_chol_inv, miss)
Arguments
sim
(list) : result of function simulate.
Y_data
: vector indicating the data at the tips.
Sigma_YY_inv
: invert of the variance-covariance matrix of the data.
Details
This function takes parameters sim and Sigma_YY_inv from
compute_mean_variance.simple. It uses function extract_simulate_internal
to extract the needed quantities from these objects.