compute_tree_correlations_matrix.scOU

times of shared ancestry of all nodes and tips, result of function
<code>compute_times_ca</code>

times_shared

(matrix) : phylogenetics distance, result of function 
<code>compute_dist_phy</code>

distances_phylo

(list) : old parameters to be used in the E step

params_old


<code>compute_tree_correlations_matrix.scOU</code> computes the (n+m)x(m+n) matrix of correlations
induced by the tree. It takes two cases in consideration: root fixed, or root in stationary
state.


internal


Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available.

compute_tree_correlations_matrix.scOU: Matrix of tree-induced correlations for the scOU

Description

Usage

Arguments

Value