extract.parsimonyCost

an object of class "<code>parsimonyCost</code>", result of function
<code><a rd-options="" href="/link/parsimonyCost?package=PhylogeneticEM&version=1.0.0" data-mini-rdoc="PhylogeneticEM::parsimonyCost">parsimonyCost</a></code>.

the root node of the subtree. By default, the root of the tree.

node


<code>extract.parsimonyCost</code> takes an object of class "<code>parsimonyCost</code>",
result of function <code><a rd-options="" href="/link/parsimonyCost?package=PhylogeneticEM&version=1.0.0" data-mini-rdoc="PhylogeneticEM::parsimonyCost">parsimonyCost</a></code>, and computes the minimum cost
at the given node.



Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

extract.parsimonyCost function

an object of class "<code>parsimonyCost</code>", result of function
<code><a rd-options='' href='parsimonyCost'>parsimonyCost</a></code>.


<code>extract.parsimonyCost</code> takes an object of class "<code>parsimonyCost</code>",
result of function <code><a rd-options='' href='parsimonyCost'>parsimonyCost</a></code>, and computes the minimum cost
at the given node.


extract.parsimonyCost: Extraction of the actual number of solutions.

Description

Usage

Arguments

Value

See Also