extract.parsimonyNumber

an object of class "<code>parsimonyNumber</code>", result of function
<code><a rd-options="" href="/link/parsimonyNumber?package=PhylogeneticEM&version=1.0.0" data-mini-rdoc="PhylogeneticEM::parsimonyNumber">parsimonyNumber</a></code>.

the root node of the subtree. By default, the root of the tree.

node

the quantity to retrieve. Either "number" for the number of
solutions, or "cost" for the minimal cost of a solution. Default to "number".

what


<code>extract.parsimonyNumber</code> takes the two matrices computed by 
<code><a rd-options="" href="/link/parsimonyNumber?package=PhylogeneticEM&version=1.0.0" data-mini-rdoc="PhylogeneticEM::parsimonyNumber">parsimonyNumber</a></code>, and compute the actual number of parsimonious
solution for any subtree starting from a given node.



Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

extract.parsimonyNumber function

an object of class "<code>parsimonyNumber</code>", result of function
<code><a rd-options='' href='parsimonyNumber'>parsimonyNumber</a></code>.


<code>extract.parsimonyNumber</code> takes the two matrices computed by 
<code><a rd-options='' href='parsimonyNumber'>parsimonyNumber</a></code>, and compute the actual number of parsimonious
solution for any subtree starting from a given node.


extract.parsimonyNumber: Extraction of the actual number of solutions.

Description

Usage

Arguments

Value

Details

See Also