extract.simul_process

an object of class "<code>simul_process</code>", result of function
<code><a rd-options="" href="/link/simul_process?package=PhylogeneticEM&version=1.0.0" data-mini-rdoc="PhylogeneticEM::simul_process">simul_process</a></code>.

one of "tips" (the default) or "nodes". Where to extract the results.

where

one of "states" (the default), "expectation", or "optimal.values".

what


<code>extract.simul_process</code> takes an object of class "<code>simul_process</code>",
result of function <code><a rd-options="" href="/link/simul_process?package=PhylogeneticEM&version=1.0.0" data-mini-rdoc="PhylogeneticEM::simul_process">simul_process</a></code>, and extracts the traits values, 
expectations or optimal values at the tips or the internal nodes.



Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

extract.simul_process function

an object of class "<code>simul_process</code>", result of function
<code><a rd-options='' href='simul_process'>simul_process</a></code>.


<code>extract.simul_process</code> takes an object of class "<code>simul_process</code>",
result of function <code><a rd-options='' href='simul_process'>simul_process</a></code>, and extracts the traits values, 
expectations or optimal values at the tips or the internal nodes.


extract.simul_process: Extraction of simulated traits

Description

Usage

Arguments

Value

Details

See Also