incidence.matrix

a phylogenetic tree, class <code><a rd-options="ape" href="/link/phylo?package=PhylogeneticEM&version=1.0.0&to=ape" data-mini-rdoc="ape::phylo">phylo</a></code>.

phylo


<code>incidence.matrix</code> computes the incidence matrix T of a tree : for a 
lineage i and a branch b, T[i,b]=1 if b is in the lineage i, and 0 
otherwise.



Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

incidence.matrix function

a phylogenetic tree, class <code><a rd-options='ape' href='phylo'>phylo</a></code>.

incidence.matrix: Incidence matrix of a tree.

Description

Usage

Arguments

Value

See Also