incidence_matrix_actualization_factors

tree

selection.strength

a nedge vector of relative times associated with the branches.

relativeTimes_tree

a matrix, result of function <code>compute_times_ca</code>.

times_shared


<code>incidence_matrix_actualization_factors</code> computes a ntaxa x nedges matrix of the 
(1 - exp(-alpha * (t_i - t_pa(j) - nu_j * l_j)))_i tip, j node.
This matrix is to be multiplied to the incidence matrix with an outer product.


internal


Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available.

incidence_matrix_actualization_factors: Compute the actualizations factors to apply to the incidence matrix.

Description

Usage

Arguments

Value