PhylogeneticEM (version 1.0.0)

init.parsimonyNumber: Initialization for parsimonyNumber.

Description

init.parsimonyNumber initialize a (ntaxa + nNodes)x(nclus) matrix with NAs everywhere, except for the tips.

Usage

init.parsimonyNumber(phy, clusters)

Arguments

phy

phylogenetic tree.

clusters

the vector of the clusters of the tips.

Value

A (ntaxa + nNodes)x(nclus) matrix, with ntaxa first lines initialized as described.

Details

At a tip i in state k, the line-vector is initialized as follow : Ind(k=p)_1