plot.enumerate_parsimony

an object of class <code>enumerate_parsimony</code>, result of
function <code><a rd-options="" href="/link/enumerate_parsimony?package=PhylogeneticEM&version=1.0.0" data-mini-rdoc="PhylogeneticEM::enumerate_parsimony">enumerate_parsimony</a></code>

whether to number the solutions. Default to FALSE.

numbering

the number of columns on which to display the plot.
Default to 3.

nbr_col

further arguments to be passed to <code><a rd-options="ape" href="/link/plot.phylo?package=PhylogeneticEM&version=1.0.0&to=ape" data-mini-rdoc="ape::plot.phylo">plot.phylo</a></code> or 
<code><a rd-options="ape" href="/link/nodelabels?package=PhylogeneticEM&version=1.0.0&to=ape" data-mini-rdoc="ape::nodelabels">nodelabels</a></code>.


<code>plot.enumerate_parsimony</code> plots a representation of all the equivalent
solutions.



Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

plot.enumerate_parsimony function

an object of class <code>enumerate_parsimony</code>, result of
function <code><a rd-options='' href='enumerate_parsimony'>enumerate_parsimony</a></code>

further arguments to be passed to <code><a rd-options='ape' href='plot.phylo'>plot.phylo</a></code> or 
<code><a rd-options='ape' href='nodelabels'>nodelabels</a></code>.

plot.enumerate_parsimony: Plot all the equivalent solutions.

Description

Usage

Arguments

Value

Details

See Also