shifts_to_simmap

imput tree in <code><a rd-options="ape" href="/link/phylo?package=PhylogeneticEM&version=1.0.0&to=ape" data-mini-rdoc="ape::phylo">phylo</a></code> format

tree

shifts_edges


<code>shifts_to_simmap</code> takes a vector of edges where the shifts occur, and return a
simmap formated tree, mapped with corresponding regimes.



Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

shifts_to_simmap function

imput tree in <code><a rd-options='ape' href='phylo'>phylo</a></code> format

shifts_to_simmap: Simmap format mapping from list of edges

Description

Usage

Arguments

Value

Details