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PhylogeneticEM (version 1.0.0)

update.allocate_regimes_from_shifts: Update function for regime allocation.

Description

update.allocate_regimes_from_shifts computes the regime of a daughter node, knowing the regime at the parent node and the vector of shifts positions

Usage

update.allocate_regimes_from_shifts(edgeNbr, ancestral, shifts_edges, ...)

Arguments

edgeNbr
: Number of the edge considered
ancestral
: regime of the parent node
shifts_edges
positions on edges

Value

regime of the daughter node.

Details

This function is used in function allocate_regimes_from_shifts and is designed to furnish function recursionDown with the right structure of data.