PhylogeneticEM (version 1.0.1)

extract.partitionsNumber: Extract from object partitionsNumber

Description

extract.partitionsNumber extracts the number of partitions for a given sub-tree, either marked or non-marked.

Usage

# S3 method for partitionsNumber
extract(x, node = attr(x, "ntaxa") + 1,
  npart = attr(x, "npart"), marqued = FALSE, ...)

Arguments

x

an object of class partitionsNumber, result of function partitionsNumber.

node

the root node of the subtree where to get the result. Default to the root of the tree.

npart

the number of partitions (colors) allowed at the tips. Default to the value used in the call of function partitionsNumber (the maximum).

marqued

whether to extract the marqued (TRUE) or un-marqued (FALSE) partitions. The number of models is the number of un-marqued partitions. Default to FALSE.

...

unused.

Value

the number of partitions with npart colors, on the sub-tree starting at node, marqued or not.

See Also

partitionsNumber