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PhylogeneticEM (version 1.0.1)

segmentation.OU.specialCase.same_shifts: Segmentation in the OU special case, conserving the same shifts position.

Description

segmentation.OU.specialCase.same_shifts keeps the same shifts position, and optimize the sum of costs using function optimize_costs_given_shift_position.OU.specialCase.

Usage

segmentation.OU.specialCase.same_shifts(phylo, shifts_old, D, Xp, ...)

Arguments

phylo

a phylogenetic tree

shifts_old

the previous list of shifts (only position is used)

conditional_law_X

moments of the conditional law of X given Y, result of function compute_M.OU.specialCase

selection.strength

the selection strength

Value

List containing : beta_0 : the optimal value at the root shifts : list containing the computed tau and delta costs : vector of costs

Details

This is the best move if keeping the previous shifts positions.