check_data

a phylogenetic tree, class <code><a rd-options="ape" href="/link/phylo?package=PhylogeneticEM&version=1.2.1&to=ape" data-mini-rdoc="ape::phylo">phylo</a></code>.

phylo

matrix of data at the tips (pxntaxa)

Y_data

(bool) whether to check the tips names or not

check.tips.names

<code>check_data</code> tests if the data matrix has the right format, and if it is
correctly ordered to match the tips names.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein<e2><80><93>Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

check_data function

a phylogenetic tree, class <code><a rd-options='ape' href='phylo'>phylo</a></code>.

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check_data: Test the format of data entry.

Description

Usage

Arguments

Value