extract.parsimonyCost

an object of class "<code>parsimonyCost</code>", result of function
<code><a rd-options="" href="/link/parsimonyCost?package=PhylogeneticEM&version=1.2.1" data-mini-rdoc="PhylogeneticEM::parsimonyCost">parsimonyCost</a></code>.

the root node of the subtree. By default, the root of the tree.

node

<code>extract.parsimonyCost</code> takes an object of class "<code>parsimonyCost</code>",
result of function <code><a rd-options="" href="/link/parsimonyCost?package=PhylogeneticEM&version=1.2.1" data-mini-rdoc="PhylogeneticEM::parsimonyCost">parsimonyCost</a></code>, and computes the minimum cost
at the given node.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein<e2><80><93>Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

extract.parsimonyCost function

an object of class "<code>parsimonyCost</code>", result of function
<code><a rd-options='' href='parsimonyCost'>parsimonyCost</a></code>.

<code>extract.parsimonyCost</code> takes an object of class "<code>parsimonyCost</code>",
result of function <code><a rd-options='' href='parsimonyCost'>parsimonyCost</a></code>, and computes the minimum cost
at the given node.

extract.parsimonyCost: Extraction of the actual number of solutions.

Description

Usage

Arguments

Value

See Also