get_criterion

an object of class <code>PhyloEM</code>, result of function
<code><a rd-options="" href="/link/PhyloEM?package=PhylogeneticEM&version=1.2.1" data-mini-rdoc="PhylogeneticEM::PhyloEM">PhyloEM</a></code>.

select the parameters to plot. One of "LINselect", "DDSE",
"Djump" or "likelihood" (for un-penalized likelihood). Default to "LINselect". See
<code><a rd-options="" href="/link/params_process.PhyloEM?package=PhylogeneticEM&version=1.2.1" data-mini-rdoc="PhylogeneticEM::params_process.PhyloEM">params_process.PhyloEM</a></code>.

method.selection

This function takes an object of class <code>PhyloEM</code>, result of function
<code><a rd-options="" href="/link/PhyloEM?package=PhylogeneticEM&version=1.2.1" data-mini-rdoc="PhylogeneticEM::PhyloEM">PhyloEM</a></code>, and return the values of the model selection criterion
for each value of K.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein<e2><80><93>Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

get_criterion function

an object of class <code>PhyloEM</code>, result of function
<code><a rd-options='' href='PhyloEM'>PhyloEM</a></code>.

select the parameters to plot. One of "LINselect", "DDSE",
"Djump" or "likelihood" (for un-penalized likelihood). Default to "LINselect". See
<code><a rd-options='' href='params_process.PhyloEM'>params_process.PhyloEM</a></code>.

This function takes an object of class <code>PhyloEM</code>, result of function
<code><a rd-options='' href='PhyloEM'>PhyloEM</a></code>, and return the values of the model selection criterion
for each value of K.

get_criterion: Get Model Selection Criterion

Description

Usage

Arguments

Value

See Also