compute_dist_phy

<code>compute_dist_phy</code> computes the phylogenetic distances d_ij between all the
tips i, j.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

compute_dist_phy function

<dl><dt>phy</dt>
<dd>a phylogenetic tree of class <code>phylo</code>.</dd></dl>

Arguments

Phylogenetic Distances — compute_dist_phy

<dl>

<dt>phy</dt>
<dd>a phylogenetic tree of class <code>phylo</code>.</dd>

</dl>

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compute_dist_phy: Phylogenetic Distances

Description

Usage

Value

Arguments

Details