get_criterion

This function takes an object of class <code>PhyloEM</code>, result of function
<code>PhyloEM</code>, and return the values of the model selection criterion
for each value of K.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

get_criterion function

<dl><dt>res</dt>
<dd>an object of class <code>PhyloEM</code>, result of function
<code>PhyloEM</code>.</dd>
<dt>method.selection</dt>
<dd>select the parameters to plot. One of "LINselect", "DDSE",
"Djump" or "likelihood" (for un-penalized likelihood). Default to "LINselect". See
<code>params_process.PhyloEM</code>.</dd></dl>

Arguments

Get Model Selection Criterion — get_criterion

<dl>

<dt>res</dt>
<dd>an object of class <code>PhyloEM</code>, result of function
<code>PhyloEM</code>.</dd>


<dt>method.selection</dt>
<dd>select the parameters to plot. One of "LINselect", "DDSE",
"Djump" or "likelihood" (for un-penalized likelihood). Default to "LINselect". See
<code>params_process.PhyloEM</code>.</dd>

</dl>

get_criterion: Get Model Selection Criterion

Description

Usage

Value

Arguments

See Also