allocate_regimes_from_shifts

<code>allocate_regimes_from_shifts</code> allocate a number (from 0 to the number 
of shifts) to each node, corresponding to its regime : all nodes below shift 
i are numbered by i.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

allocate_regimes_from_shifts function

<dl><dt>phylo</dt>
<dd>a phylogenetic tree, class <code>phylo</code>.</dd>
<dt>shifts_edges</dt>
<dd>edges were the shifts are.</dd></dl>

Arguments

Allocation of regimes to nodes. — allocate_regimes_from_shifts

<dl>

<dt>phylo</dt>
<dd>a phylogenetic tree, class <code>phylo</code>.</dd>


<dt>shifts_edges</dt>
<dd>edges were the shifts are.</dd>

</dl>

allocate_regimes_from_shifts: Allocation of regimes to nodes.

Description

Usage

Value

Arguments