check.selection.strength

<code>check.selection.strength</code> checks, if the process is an OU, if the
selection strength is not too low, in which case the process is replaced
with a BM.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

check.selection.strength function

<dl><dt>process</dt>
<dd>: "BM" or "OU"</dd>
<dt>selection.strength</dt>
<dd>the selection strength parameter (if OU)</dd>
<dt>eps</dt>
<dd>the tolerance for the selection strength</dd></dl>

Arguments

Check selection strength — check.selection.strength

<dl>

<dt>process</dt>
<dd>: "BM" or "OU"</dd>


<dt>selection.strength</dt>
<dd>the selection strength parameter (if OU)</dd>


<dt>eps</dt>
<dd>the tolerance for the selection strength</dd>

</dl>

check.selection.strength: Check selection strength

Description

Usage

Value

Arguments

Details