compute_fixed_moments

<code>compute_fixed_moments</code> compute the fixed matrices used in E step when
there is no missing data.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

compute_fixed_moments function

<dl><dt>times_shared</dt>
<dd>matrix of the tree, result of function
<code>compute_times_ca</code></dd></dl>

Arguments

Compute fixed moments for E step. — compute_fixed_moments

<dl>

<dt>times_shared</dt>
<dd>matrix of the tree, result of function
<code>compute_times_ca</code></dd>

</dl>

compute_fixed_moments: Compute fixed moments for E step.

Description

Usage

Value

Arguments