compute_shifts_from_betas

<code>compute_shifts_from_betas</code> computes the list of shifts corresponding
to the vector of optimal values on nodes.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

compute_shifts_from_betas function

<dl><dt>phylo</dt>
<dd>a phylogenetic tree, class <code>phylo</code>.</dd>
<dt>betas</dt>
<dd>vector of size (ntaxa + Nnode) of the optimal values at each
node and tip.</dd></dl>

Arguments

Computation of shifts from the vector of optimal values — compute_shifts_from_betas

<dl>

<dt>phylo</dt>
<dd>a phylogenetic tree, class <code>phylo</code>.</dd>


<dt>betas</dt>
<dd>vector of size (ntaxa + Nnode) of the optimal values at each
node and tip.</dd>

</dl>

compute_shifts_from_betas: Computation of shifts from the vector of optimal values

Description

Usage

Value

Arguments

Details