compute_state_filter

<code>compute_state_filter</code> compute the admissible daughters states, i.e. states that 
realize the minimum cost for the tree parent -&gt; daughter -&gt; subtree(daughter), when 
the parent node is in state k.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

compute_state_filter function

<dl><dt>cost</dt>
<dd>a (ndaughters) x (nclus) matrix of the cost of each state for the 
daughters nodes.</dd>
<dt>k</dt>
<dd>the parental state considered.</dd></dl>

Arguments

List of potential daughter states when parent is in state k. — compute_state_filter

<dl>

<dt>cost</dt>
<dd>a (ndaughters) x (nclus) matrix of the cost of each state for the 
daughters nodes.</dd>


<dt>k</dt>
<dd>the parental state considered.</dd>

</dl>

compute_state_filter: List of potential daughter states when parent is in state k.

Description

Usage

Value

Arguments

Details