compute_stationary_variance

<code>compute_stationary_variance</code> computes the stationary variance matrix of
an OU process.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

compute_stationary_variance function

<dl><dt>variance</dt>
<dd>the variance (rate matrix) of the process.</dd>
<dt>selection.strength</dt>
<dd>the selection strength (alpha) matrix of the 
process.</dd></dl>

Arguments

Compute the stationary variance matrix — compute_stationary_variance

<dl>

<dt>variance</dt>
<dd>the variance (rate matrix) of the process.</dd>


<dt>selection.strength</dt>
<dd>the selection strength (alpha) matrix of the 
process.</dd>

</dl>

compute_stationary_variance: Compute the stationary variance matrix

Description

Usage

Value

Arguments