compute_times_ca

<code>compute_times_ca</code> computes the times t_ij between the root and the common
ancestor of two tips i, j.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

compute_times_ca function

<dl><dt>phy</dt>
<dd>a phylogenetic tree of class <code>phylo</code>.</dd></dl>

Arguments

Common Ancestors Times — compute_times_ca

<dl>

<dt>phy</dt>
<dd>a phylogenetic tree of class <code>phylo</code>.</dd>

</dl>

compute_times_ca: Common Ancestors Times

Description

Usage

Value

Arguments

Details