compute_tree_correlations_matrix.BM

<code>compute_tree_correlations_matrix.BM</code> returns times_shared its provided argument.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

compute_tree_correlations_matrix.BM function

<dl><dt>times_shared</dt>
<dd>times of shared ancestry of all nodes and tips, result of function
<code>compute_times_ca</code></dd></dl>

Arguments

Matrix of tree-induced correlations for the BM — compute_tree_correlations_matrix.BM

<dl>

<dt>times_shared</dt>
<dd>times of shared ancestry of all nodes and tips, result of function
<code>compute_times_ca</code></dd>

</dl>

compute_tree_correlations_matrix.BM: Matrix of tree-induced correlations for the BM

Description

Usage

Value

Arguments