compute_var_M.BM

<code>compute_var_M.BM</code> finds the variance that is the maximum of likelihood

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

compute_var_M.BM function

<dl><dt>phylo</dt>
<dd>Tree</dd>
<dt>var_diff</dt>
<dd>variances of differences result of function <code>compute_var_diff.BM</code></dd>
<dt>diff_exp</dt>
<dd>differences of expectations result of function <code>compute_diff_exp.BM</code></dd>
<dt>edges_max</dt>
<dd>Edges where the shifts occur result of function <code>segmentation.BM</code></dd></dl>

Arguments

Computation of the variance. — compute_var_M.BM

<dl>

<dt>phylo</dt>
<dd>Tree</dd>


<dt>var_diff</dt>
<dd>variances of differences result of function <code>compute_var_diff.BM</code></dd>


<dt>diff_exp</dt>
<dd>differences of expectations result of function <code>compute_diff_exp.BM</code></dd>


<dt>edges_max</dt>
<dd>Edges where the shifts occur result of function <code>segmentation.BM</code></dd>

</dl>

compute_var_M.BM: Computation of the variance.

Description

Usage

Value

Arguments

Details