compute_var_diff.BM

<code>compute_var_diff</code> computes variances of differences between all the
nodes and their parents.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

compute_var_diff.BM function

<dl><dt>phylo</dt>
<dd>a phylogenetic tree</dd>
<dt>conditional_law_X</dt>
<dd>result of function <code>compute_E</code></dd></dl>

Arguments

Compute variances of differences between nodes and parents. — compute_var_diff.BM

<dl>

<dt>phylo</dt>
<dd>a phylogenetic tree</dd>


<dt>conditional_law_X</dt>
<dd>result of function <code>compute_E</code></dd>

</dl>

compute_var_diff.BM: Compute variances of differences between nodes and parents.

Description

Usage

Value

Arguments